This issue occurs because the System Role configuration used to deny rights to list builder also contains a Query Feature Permission which grants a System Privilege to "allow access to all query view."   List builders are build on query views and assigned system privileges supercede denying access, so this system role configuration is invalid given the end goal of restricting access to some list builders. 

Two options are available as fixes:

  1. Remove the system privilege feature permission that provides access to all query views from this system role
  2. Create a new role with no system privilege feature permission that provides access to all query views