When viewing the Generate payments page the data list that contains all of the processes does not have site security. Users are not able to assign a specific site to a Generate payments process so it only shows for that site in the data list.
This has been resolved. Please download and install the latest Service Pack which contains all fixes from previous patches. If you are running an older version, download and install the latest version and then the patch.
Steps to Duplicate
1. Navigate to the Revenue functional area. 2. Under the Processing heading select EFT. 3. Select Generate payments. 4. Notice that you cannot assign a site to a Generate payments process. A user will be able to see all processes in the data list regardless of their assigned site if the user has feature access to it AND they have access to the Account System that is used on the process.