Note: If you change the fund transaction requirement, it assigns a default project (or transaction characteristic) to ALL historical transactions.
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When paying an invoice, the check does not seem to hold the invoice's project distribution, or any other transaction characteristic, such as a Transaction Code distribution. In this case, the General Ledger configuration of the Funds are set to "do not require projects(or other transaction characteristic)". If Funds do not require project then the checks should not post to the projects.
Note: If you change the fund transaction requirement, it assigns a default project (or transaction characteristic) to ALL historical transactions.