When a user attempts to apply a payment in batch to a planned gift the batch validation returns an error with the incorrect GL account. If the payment is applied manually the revenue receives the correct GL distributions. The user can also turn on the unmapped transaction settings in the GL the batch will commit without error and the generated payment will receive the correct distribution.
Download and install the latest patch, which contains all fixes from previous patches. If you are running an older version, download and install the latest version and then the patch.