ETL Refresh taking longer after upgrading to 4.0

When upgrading to version 4.0, the ETL refresh is taking longer than it did in version 2.94. 
Download and install the latest patch which contains all fixes from previous patches. If you are running an older version, download and install the latest version and then the patch.

Environment

 Blackbaud CRM
 4.0
 4.0
 Service Pack 4
 Version 4.0

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