If the batch template has the checkbox checked to create exception batches, then any transactions in the batch that have exception errors should be removed from the original batch and put into an exception batch. In this case that did not occur both excepted transactions remained in the original batch. One of those transactions also did appear in an exception batch, but the other was not present.
We are currently evaluating this issue for a fix in a future release.
Steps to Duplicate
1. Attempt to committ a revenue batch with some items that have exceptions
2. Upon committal of the batch, see that the excepted transactions are still in the original batch with the errors.
3. Upon looking at the exception batch, notice that not all of the excepted transactions from the original batch will be present.