With the switch to Aatrix, the default setting changed to process all states using the generic Federal RS record. 
When this program is run with the switch 1 option, it calls the "old" process which will allow you to populate the custom Indiana RS and RV records
You will need to create a new W2 efile using the program pyu335, with a switch of 1, no parameter.

1. Make sure all users are logged out of payroll.
2. Select File -> Open FundWare.
3.  Verify that 00 - System Administration appears in the drop down box, click OK.
4.  Select System Administration -> System Utilities.
5.  Enter the following in the Execute Program portion of the screen:       

Program Name                   PYU335        
Switches                             1      
Parameters                          (blank)     
Business Date                    Use the year end date, 12/31/####.       
Division                  Select the appropriate division.       
Click Run.

6.  Complete the blue screens for IN, with Y to include RS records, to create the state electronic file.